NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209236_1000730

Scaffold Ga0209236_1000730


Overview

Basic Information
Taxon OID3300026298 Open in IMG/M
Scaffold IDGa0209236_1000730 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19492
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012104Metagenome / Metatranscriptome283Y
F067600Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0209236_10007304F012104N/AVNEKFGVYKSLCCGAEIVITKGAIFPKCPDHPQYTTIWKLLPEEDMTDVSNKKKPDSKPA
Ga0209236_10007308F067600GGAGGMHSKDIVAGERASHAQRYVAMFLWMFLGFLYVFLIGEWLTVSNRDKLFTEYIDHVIQVAANEQRPAKEVRALILIKAGDLFLPVQEDEIQITGKGLALRAAVHYKVDISLPIVNQPVYRMKFDHDRALRPPQ

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