NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209236_1003069

Scaffold Ga0209236_1003069


Overview

Basic Information
Taxon OID3300026298 Open in IMG/M
Scaffold IDGa0209236_1003069 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10204
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028471Metagenome191N
F053159Metagenome141N

Sequences

Protein IDFamilyRBSSequence
Ga0209236_10030691F053159N/ASVHISTEFAFLLSGVFIMLVAWALNLLGTIAGDQGSGHGVSDVYLWLFLMFQGLGFSTVGVIGANYREFMSNPVLGKRYVVGFLLLADGGLHLLALNQHLAAAPQAAFFAIVSPIQIIGGIVFIDLPRRLDPFWLLFTGFLIVAFVVTRTVAVWPIGVVEDVDPLGIISKAVEVATGAVLFSLVRANHAKKHQTRAASAANGP
Ga0209236_10030697F028471GGAGGMESHAGKHFSLLPTMRNRMRVRIVWLEISLILLALAFAEVGEILRELRTDVVLDWFVSIAPLIWINVSIVVLYAFFRLYLNPDLAPTTAGPVRPRATPFLLPNFRILRARGKRFRRTWGIASAAYAIGYGLLQGIIVVDLSGSLQPVFVVIESAVGYGPGIAWAPTATLGVQLRPYSVAAAVALSLLSGLVVALALQVVTKTQRAVRALPSPLFGFAVMCPACAGGPVSGLFLAYVAPIAFMGGMGSASAFSRLLGFSTVLLIVTLVVLWTVISFLSNVLLPDGPAITQPRSNSA
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