NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209236_1004640

Scaffold Ga0209236_1004640


Overview

Basic Information
Taxon OID3300026298 Open in IMG/M
Scaffold IDGa0209236_1004640 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8379
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035684Metagenome171N
F081104Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209236_10046401F081104N/ASQIGSPLLLFYDQSRGKWVGSYIVNSTNPAGIWQIQVNASDIYGNMGQGSTSTLVTAAASPPQSSTFNYLLIAALVLIAALAIIVSWIIYGRKRVLRKVLKVDIEAIHAEAKKVENQDFFKKVQEQLKQQKREAVDRNSSG
Ga0209236_10046409F035684GAGMGLLPEFFTLLGIEIFAAMSLVSVLLDRDIPSSAQWLFQGAAGLGLGQLVVTEGFGTSSVIDASRFWISIFYLALSVCSVAGLNVYLAAVRRKTAIASVFSGTITTPTVTVSVLSVSSYLGGVDVSFTPLTIVILIVPALLVGVGAYGFLHKTFKRIGKSTGRELSPASVSAPVEAPKVYELLDLKDILGEWEESQKKDRVA
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