NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209236_1009348

Scaffold Ga0209236_1009348


Overview

Basic Information
Taxon OID3300026298 Open in IMG/M
Scaffold IDGa0209236_1009348 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5799
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046273Metagenome151N
F061734Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0209236_10093482F061734GGAMVVLTIVLLLLVVIFVPRPNVRLTNVRYQTSSCDPVTSSVIATAYVTFTNTGTVDGYIVARFYVDGERRATSGFVVAAQATVEGTLVATILGCLSHHYSLDTCFPSGESTTC
Ga0209236_10093486F046273N/AMGSGRWAGDAEFATLFGPVGLLGPVERTRLAICAVLIVAVVLSAGLVALRFIPPFAAPGGNSPPVGIAFDVTHVGGKPEMNTTEYWVARITHVDTNESLSSYRATLLRNGSTLVERAAVKPGQLGDSNHPVFEFFEWGASCSPTPCPPPEGPDGNLSVYDYFRISFPDPGTAYTVRVIWAETGDVVGEIVIRT
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