NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209236_1011073

Scaffold Ga0209236_1011073


Overview

Basic Information
Taxon OID3300026298 Open in IMG/M
Scaffold IDGa0209236_1011073 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5291
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001093Metagenome / Metatranscriptome780Y
F081674Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209236_10110737F001093AGGMASDTKSRESWDEQESSGKSATRTNPLKLSRVFRFDDPQTGAPQISDFPDSNPTGDTPLEIRMKHFTEIENFTFLAHVLGHELGGTTPRPIRTITDLQVPDDEFQNFVNTAKTVNVTDEELADTILDVGINWEHFVASTDNLLLPDHPLKISDVLMQEKIDSLDIISEAFVREINLRSIEKQTGTKTRKSHE
Ga0209236_10110738F081674N/AMVDYGIVLGLLGVASGVASLIYSRSQVVAARRQAEEATRATLLESNREISVRLQQIRSRFFKVPGIDDELQKSRPEIKEVVDSVGGGDVYAFWRDVIDTFEDIFVLRRSGIVRDEHWRVWTGSQMGIYATLPRFQLVFKLAKQQGFLDPGFVRFFEPLLEGKSLQDPMTHAGHTNPASAPRLRRFRLN
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