NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209236_1013500

Scaffold Ga0209236_1013500


Overview

Basic Information
Taxon OID3300026298 Open in IMG/M
Scaffold IDGa0209236_1013500 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4746
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006466Metagenome372Y
F013280Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0209236_10135004F006466GGAGGLLRNKTAILAASGSLLLVIVWGKVAGDLYGLPGPDSAVLLLQFMLVIFIMEASITTLTLDSAIKPLEGKNDDLSESARMRAMRWERVQLFNLGKLTAASFVLSLGLLILGSLVSISFNQIAFSGVLVLAAVVAIFVLLTYRREPEERRGSVD
Ga0209236_10135007F013280N/ARCRRTQDSTTNRELKTVRLLFWSAIAYAILLVLIRGIFPSESTPTISLTGIPLIVIVVVIVRDLARRSTSPALRRTIPSTAGPRRTQVHFLSGQFKVAASASSSYFENVVRARLRELLTTKVALETGLETETVRRILLDPRDGPHLLQQESLYHILYGPTPPSGLARISLIGDAIDLIGAWKG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.