NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209236_1033013

Scaffold Ga0209236_1033013


Overview

Basic Information
Taxon OID3300026298 Open in IMG/M
Scaffold IDGa0209236_1033013 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2745
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013998Metagenome / Metatranscriptome266N
F014491Metagenome / Metatranscriptome262N
F040025Metagenome162N

Sequences

Protein IDFamilyRBSSequence
Ga0209236_10330131F040025GAGLTPVAANTASCQTVSSEDYAPPEQLLLSDLIRGKALELFEHKEESKDGTYDFEKLFARILSEKDWTDKLASILDKIRNRFRLRNTNTKLSVELTSLIPDMNEVAKAYDE
Ga0209236_10330133F013998GGALKMPLKIHRLLSLLAFVLALIGGVLLVVSALGGLGRLSIGSLAINSLVFLFGLGAILGGWLIYTGIRKLGGIITLLAGIILFVLTGGAGTAVILIIVAGVLGLVAAEMKPWWAFWR
Ga0209236_10330134F014491GAGGLKPGSSKSSWHNTAMFLLILASLAMFGTIAYTITLQEVSNYAISYITGLLITVTGILLGLSGLTPLSKSLERMKLQVTLTITTLLWQVAIIMIALTTGFTFSPSTPVLRYLFLTGIGLFTILVVFYSTSTVEATRQRLLVELAAKGGEPGRTSG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.