NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209236_1037739

Scaffold Ga0209236_1037739


Overview

Basic Information
Taxon OID3300026298 Open in IMG/M
Scaffold IDGa0209236_1037739 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2517
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002498Metagenome / Metatranscriptome553Y
F004048Metagenome455Y
F016137Metagenome / Metatranscriptome249Y

Sequences

Protein IDFamilyRBSSequence
Ga0209236_10377392F002498AGGAGGLFFDAMQRLGLPNEVKQAAVALYLDFKSRPIGEYNADHKNLDIFLIASISLTAKAMGDLRTDHEFESKMFVSREKLLDAEERIMKSFGVQDSILPFPDLVSQLTKRQIESMAEGFAERGLVSSNEREELVRRTYDYLDAAVERGLGPKMSYRGRAAGVMLKAVRDLELQIPEMDIARAAGFDKRTMATNADVIDALLKDSKSSRRKET
Ga0209236_10377393F004048AGCAGLDRLRRRSWYERIKTGPSPDDNALLQLTRELSAQFQMPYWYRQIVWGRLDRYHSTGGIMSKPIILSKETVTVPGSLLVAELMLPEFLKRKMSLDEWKILIASHMVRFKAYNKGRMNRLLGKIALAPRELFFLLLFEIPAASSGGLSGPVLYFPSPIFLLAALWIRRSLRKSLKRQEFELDRKVAKQLGTQQVSQTLEKIQNLDQKRIPTNLRLPYVACWNPSIKERIGELSNPRLEHLPRPSRIPKIGLRGRVIITVAGFAIFWGSGLVEGNIYARGQSMVVCMDTTCSALVVIAAVGFWMAIIGGISIVIWVLRRFL
Ga0209236_10377394F016137N/AHEMSERQARGKPTVDLERRLEELEGQKHDLVERLEALWSA
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