Scaffold Ga0209236_1043081

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209236_1043081

Scaffold Ga0209236_1043081

Overview

Basic Information
Taxon OID	3300026298 Open in IMG/M
Scaffold ID	Ga0209236_1043081 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2308
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016136	Metagenome / Metatranscriptome	249	Y
F066668	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209236_10430812	F016136	GAG	MTMLLGTFAIAISALAIPAVAGAPPTGSVDSSNRVIFNTGSLTGVFEGNVPHITFYATNQLGRTTYQLNFRALIEFSISSGEGTYENPMMVARADFDSATWTPSNFYAIKDPSTGTTIGMGFNFTLNGPMQIAEQTPPPQSLKPGDVVLVVKAYNNTRTITVNGQSVTINTSEIKIDFALKNWPFASPNDKLALQVNLHSDYNHFDLDQSTGTTAVDATNDEGAGVMEHLYTQTTTTEQNVRYDSGPVTSSMNIGFFHFVNTATVTSASGTAQSVPVVASYKAEKDGPETFLKLYLVYPYFASGSTLVHDPSFGLQGGLPTLYIIAGGAGIAGLAAVLVIRHRHLQIQRFPKDN
Ga0209236_10430813	F066668	N/A	GTAFAMLPLLLVPGLILLVQPFSAVIQSATAFTILLQVGVQVWVVCLLSSAISISKGLKMERTALISLAVMYLNITAVIFALSLGLF

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