NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209236_1054547

Scaffold Ga0209236_1054547


Overview

Basic Information
Taxon OID3300026298 Open in IMG/M
Scaffold IDGa0209236_1054547 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1974
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013998Metagenome / Metatranscriptome266N
F019978Metagenome226N
F040025Metagenome162N

Sequences

Protein IDFamilyRBSSequence
Ga0209236_10545471F040025GAGLTPVAANTGSCQTVSSEDYEPPEQLLLSDLIRGKALELFEHKEESKDGTYDFEKLFARILSEKDWTDKLASILDKIRNRFRLRNTNTKLSVELTSLIPDMNEVAKAYDE
Ga0209236_10545472F019978GAGMSEKKRVPPWERAQLSFTLAERRRLRQVEENERPGKTRLLDLEENRKRLAEIRKHFCPDCQRYIRIDQLTREENKIGEEQGFCKCAKNAPKP
Ga0209236_10545473F013998N/ALKMPLKIHRLLSLVAFVLALIGGVLLVVSALGGLGRLSIGSLAINGLVFLFGLGAILGGWLIYTGIRKLGGIITLLAGIILFVLTGGAGTAVLLVIVAGVLGLVAAEMKPWWAFWR
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