Scaffold Ga0209236_1061362

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209236_1061362

Scaffold Ga0209236_1061362

Overview

Basic Information
Taxon OID	3300026298 Open in IMG/M
Scaffold ID	Ga0209236_1061362 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1824
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001850	Metagenome	626	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209236_10613621	F001850	N/A	MRTTCWFVAAALWLVGISSAHAQRRIRVGPTYSLLSLADLSGSNHSFSSFGGSAALITGDDGESGLTIARYNDLSTDGRVRRLTLFGLDSYYYPIGARGVVAPFAGTTLGLARVTEARLGCLLLCGDTVSTTSQLALAFGLGVRVNVGSAAVATLEGRFLQVPGSDIQALEAVANASVALGSLHKGALLAGTLGPAVSAFIPISGPLRGRSPFAGVRFRRDTKKAGSLGLEIDYAPLEVTTGSCAPGCRPNAILFAPGFEASARPVWGRVYGEVGLLLAGFYAQGPDRGMAQGAHGGVGADFYSSRVMWNLNGRLLWLQRNSGENVFGVQVGVSVSPRIGR

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.