NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209236_1064122

Scaffold Ga0209236_1064122


Overview

Basic Information
Taxon OID3300026298 Open in IMG/M
Scaffold IDGa0209236_1064122 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1770
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003391Metagenome / Metatranscriptome489N
F018144Metagenome / Metatranscriptome236N
F090080Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209236_10641221F090080N/AMTVYRRLARSKKGMSTIFGGLFFVIIILMGFNVMLWGFIQYDAYNHVITSMSQRDQQAVSENLVPVNATYPTGG
Ga0209236_10641223F018144AGGLKMKSLRRIRRDKKGINTILASLLMVVIVVVAAVMVYAWSTGLLSSLLVQNPVPKESLNYDSFNYGPNSNITIFIRNSGSAGVSLQTYYVKDNSGNQYTSPSTWTAGPIAPNAVNATLIKIYTQCTTCTYSVADSNSSLAIHTQSPWSQRGTTSSPGP
Ga0209236_10641224F003391N/AIVVVAAVMVYAWSTGLLSALLVQNPVPKESMNFENFAFNANNMNLTLNVRNTGSVAIAFASYYVKDSNGNQYARLNWPGDNAGQYPASVNPNGLVSVNIAISTKCGSSCTGATYQFSSGLSYTVTVVTTRNNQFVWQGTR
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Institute for Fundamental Biomedical Research
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