NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209027_1006801

Scaffold Ga0209027_1006801


Overview

Basic Information
Taxon OID3300026300 Open in IMG/M
Scaffold IDGa0209027_1006801 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4295
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006340Metagenome / Metatranscriptome375Y
F007853Metagenome343Y
F015711Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0209027_10068012F006340GAGMRAPNLPGIGGTSTSRYVALVAVLTALFTAYGYLSSIELRTVTRSLDLFFLLPAFFAILVSLTGKKWAGTILGTVIGLIFLGTPSAGSNFSPHITASVIVSGLVFDLYLQRSGGSLLDPSRKHLVLAGTLGNLAMAPTGLLVLQAVGVPSLAVIWTIALIGDTLVGAAGAFFGTIIVERVKGLQARRVLEAKSAVRVRV
Ga0209027_10068013F015711AGTAGGLVIIVLLSAWIAVAHFHLALLQGYITSIITPNGSVLRVTLIAAFGGFILSIPILRSLSPKDRTSNVKVEPIPQYRNPRVHPLFMTSRPARDTNFVIRKTKNRGRISRNHAGERLPPSDQT
Ga0209027_10068015F007853AGGLESKLESALDDAWSKVNIALDETSKSSADLAMGIWFAAEALEYSSLLFNLTYGLEDVKPTIKPRKGEAALVLVKDSMELLKRAREGRKRSAADAYVNLRTAADFLKSAHLAQVRKSTKKR
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