NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209238_1001051

Scaffold Ga0209238_1001051


Overview

Basic Information
Taxon OID3300026301 Open in IMG/M
Scaffold IDGa0209238_1001051 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10486
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008355Metagenome / Metatranscriptome334Y
F035697Metagenome171N

Sequences

Protein IDFamilyRBSSequence
Ga0209238_100105111F035697GAGLEEKRPRARHRFDFSGETRKRGAQTATDQILRSLNRQAQSTRDIGEDQENLEGESSQLDELDQLAEYSGSLRLGRWLFVGTLLAIPVFLWAFGLFPRILYVDTVGSLNNLLSMIPSVDLVIIVTIWVAAVVIGLLGRRARYVSKTRLG
Ga0209238_10010513F008355GGAGGLKFLRWSAVALLLVTGIIDLYYGNSFAGFYENLWYVMGGIYIFAAVVIAANIEPRFSQLTVFAYTLFLWSVWATVALETGTGLDAVAYADKAIEAVLAVNMVLLFRNSRISLNPR
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