NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209238_1002226

Scaffold Ga0209238_1002226


Overview

Basic Information
Taxon OID3300026301 Open in IMG/M
Scaffold IDGa0209238_1002226 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7644
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007745Metagenome345Y
F008234Metagenome336Y
F018154Metagenome236N

Sequences

Protein IDFamilyRBSSequence
Ga0209238_10022261F008234N/ALSPSTFFSVPLGSFTSLLLILSMIALGASSFHPGAWWSKLAVYFSLCSMTELYLSFLLMYHGALTMLLGAYGVLPPYSGTSLLPANVVGLDLNSHPNPLVTASFSLPFYLGFLSLGLITTSLIVNNIVGRREKRDQRGVAAIFTTDSE
Ga0209238_10022266F007745AGGAGGMSRSDRLEAKDPFLADYKQDLQDVVKGMKKFGPSGLQLLVQEMIRSRWIKDRRATYTYEVAWVFDQKEEAISKILKKLEEDGNIEPAGLGRGKKGPVKPYKPRTLRLPKQTIQKPSRPTKKPV
Ga0209238_10022267F018154N/AMVVEAEIAKLRKFQEFLRTEDKLVFQDLLNQCKLYAPYASTMASTIKEVPLFISMLFGQHKKIIELEKKILMLETLATKTETTIPERGVQETVEKVEANIVQTNRSPC
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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