NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209238_1003740

Scaffold Ga0209238_1003740


Overview

Basic Information
Taxon OID3300026301 Open in IMG/M
Scaffold IDGa0209238_1003740 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6089
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011929Metagenome / Metatranscriptome285Y
F025293Metagenome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0209238_10037402F011929GGGGGVAASIEILYLRFPVHPNITVIQIGPGIQRIDKEGDSYFVIGTEDGPLAGKKVEIPGDNVVAVQWALDEPAIKTS
Ga0209238_10037406F025293N/AGQVARGPERDHGRRRARAQEPGPERVVFFGPVQGSGRQCNFGGVNFRLFALALLACSGPTREPFSWPRNIDDARARLLVYIPVGREIEGARQWMGEHGFACEAPMPSATDAHAHLCHGGPSAPPDAGWRRWTIVLYERGGRLADVSAKREP
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