NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209238_1003811

Scaffold Ga0209238_1003811


Overview

Basic Information
Taxon OID3300026301 Open in IMG/M
Scaffold IDGa0209238_1003811 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6039
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010757Metagenome299Y
F012102Metagenome / Metatranscriptome283N
F012651Metagenome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0209238_10038112F010757GGAGLVKFPRYEREFFLGYANFILGLILSQEIGELLSDLVSAEGIRSDRSIDLRVMIFPARQLRRQPSRILYGSYSHSLAQISLYPLRISKDRVRREGTALFATHLNDLSIGQRKLIGEIATAAISTLIHEVLHVKFQQRSLARYVEEGMVQRLEKTYMRQWADRLDGVLRSQFSSGRQSFGVNEA
Ga0209238_10038116F012102N/ALKAAENSDTWWERANKKLAESTLKTRFTLNSDGRVEVNPPVLPADYEETRLLFEIVDDVFAMIEEEKEEAELDEPDN
Ga0209238_10038117F012651GGALGWFVIGVTLGAIILELYNVTVRFVPRWLGAATALVGFLIHLVAWFGLMLAVAGVLGSRIIRKDQLSYGLVGFGAIIVTIELWLSTPFSFG
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