NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209238_1008164

Scaffold Ga0209238_1008164


Overview

Basic Information
Taxon OID3300026301 Open in IMG/M
Scaffold IDGa0209238_1008164 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4147
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001195Metagenome / Metatranscriptome750Y
F102921Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209238_10081642F102921AGAAGGMNTSRFFLAGILSLSMLSLSLLSPDALPQVTDNQAALVKQSSIIFAGTVSRVAATSFAGVPQSARTIVVRVDSVLKKPATVSLKSGDSVTVEVKDASAFQEGAQATFYTDGWIFGSGVAVKELGHSLGAASEPVPASGMNAPGQMQGQLTDQQLKDRMNESDFVVVGRVTDVHKWNVPKTKSGAPLHVTEHDPDWHEAVVTVESVLKGGQVKGNKVIVRFPQRNDVAWVNSPRFAKDQKGIFCLNRDKTSGAPTAKMGGKQVNVYTCLGHGDALPLSEEARVRSLLKK
Ga0209238_10081644F001195GGAMALTRTNLLLESEKVRKLRKTLRSRSNSEAVRLAIDERLAAEAGLQALRALRNVGGPEDVFGRAPTRKA
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