Scaffold Ga0209240_1000240

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209240_1000240

Scaffold Ga0209240_1000240

Overview

Basic Information
Taxon OID	3300026304 Open in IMG/M
Scaffold ID	Ga0209240_1000240 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	22625
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (78.95%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F002750	Metagenome / Metatranscriptome	533	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209240_100024011	F000512	AGGA	MISVLRETHDTPEAVARSLELAGGINRFREPNYRAVWGWNRLAWIGGKFEERDPATGSLLREVVELRQEPKYPAVNRWHIEKWMPPETYGSPRAWWAQTLEIEGGRSIPALGPYPARGEYEHCFTLEGPRGEFVQLTPTVAEHIARAIEWSRHHPRSAGKRALHDREQRQERAYDAYAYDILDDAVPAFHRQPFVSVL
Ga0209240_10002402	F002750	AGG	MLNWLHRLLQTKYVGLLEGEVTRLRAENRALTNSLLGTAGFPPVDYPEPIKPQALPRLRKRSWHQIQAWKEAEAGSNEAGK

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