NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209240_1001297

Scaffold Ga0209240_1001297


Overview

Basic Information
Taxon OID3300026304 Open in IMG/M
Scaffold IDGa0209240_1001297 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9822
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008656Metagenome / Metatranscriptome330Y
F025586Metagenome / Metatranscriptome201N

Sequences

Protein IDFamilyRBSSequence
Ga0209240_10012973F025586AGGAGGMRTITVVLLALLGMTLTGVSANAGAWCANYLRGVSNCGYSSANQCWATVRGLGNGFCAPNPYPGTAYGSGGSWGTRKSPKRYQRSY
Ga0209240_10012974F008656GAGGMDPPIGPAGDDASSNLGAAGADMSTDLTPRTALVALAAFLASPAHAQPAPGQAPPNAVSIEQSAVFDVTPVTGALKETAQKGQQLVWRARRSPNDRRFELTDMSVAFLRSEAPTEVKITFAAHVSALGWRPESDPQLEVIVRTRGGASIYFWNFAVSVRCADSNRPLPPLSQVVPNDIAANLFNNVGTVEISEYRESNAPILTARQCPS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.