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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026304 Open in IMG/M |
| Scaffold ID | Ga0209240_1011192 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3398 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Laytonville, California, USA | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008511 | Metagenome / Metatranscriptome | 332 | Y |
| F016091 | Metagenome / Metatranscriptome | 250 | Y |
| F053492 | Metagenome | 141 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209240_10111922 | F008511 | AGGTGG | VSAAAPALAPAHRRTVTVRLADAAVTVAYLSLIFALLLVSFPVSFPRIIVTSWQSGYLVLVMMVLTLVLDAFLYLRVSYLLKAKPTVLVAACLGSLPIIVVGGLSFLLESAVAQTISLDLPNLQARVNEEILAHTYLGLVSAIFLPFLVIRLLQQFKATK |
| Ga0209240_10111923 | F016091 | GAGG | MSVKWVVWIGLYLVMGVLVPWATALSWAHQHGSELRPRPRQLFQRGELGLIGLVVVISVIWNLLQSQFMQQTIAVATVLLALIGTMSGDVWIESYCRQSTGTVCNHERTWRDSKNLAFLVFSMAVVVEILLDRFSKVATL |
| Ga0209240_10111925 | F053492 | AGG | MEDLSCLTKGVSRLPQAPSRSIVSIRIMSAESQHEAKKVGAVIYLATNRPLHLPDFLAEFHLSWPHLLLQKTGKEPHRALFRVGKSDFALELHHTPVPQEVTQPVVNSTLHWSTAGVMLARHQAHLSVAESAENSGVLSLACDLTKAIAALLPVMDSLAVCWLNGPALNSSESFVDTAREMFGTGLYPIKLWVAVRWDAQAGALHTKGMAQFGAPELCLSRQPDAAPIMVDYMFHVAQSVLTSHHSISDGVTMDSPQGKVTIEKSGAPGRRILILAPARTR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |