NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209240_1018486

Scaffold Ga0209240_1018486


Overview

Basic Information
Taxon OID3300026304 Open in IMG/M
Scaffold IDGa0209240_1018486 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2661
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000217Metagenome / Metatranscriptome1557Y
F000440Metagenome / Metatranscriptome1137Y
F030676Metagenome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0209240_10184864F000217AGGAGMNARIVTFSSRGDTTLLEYDPATADMEEVNRVIAEYEGKTGAQPFDMATGERIEKVTRDQNEVLMVHPIAGG
Ga0209240_10184865F030676GGAMTSAVLSVIAFLALFAWRFVFAGLRRGPMAREIAPPHRQQTNILEQSLDMLQLAGVAVIPDNRAENGSNSAKPTTPKNCAKTYLRHIIALTGATQMGSCYVLDLGTTRFHVRDRYVRRMRDVTGPKCEYEETCFYAAEKEMPKSEHIATALLQLKNNPALFDKWAAQTGAFKADGQAFSSAQ
Ga0209240_10184866F000440N/AMQTKCTPAQRAAEYLKRIATLTGAQRVRGDSYWLAAGHKNFLVDYKFVRLISRRDKSTCFSVASDPNVPSAEVVASALLQLKNNPKLFKKWRKQPGRTFKANGKMFSDLYQVTRDET
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Institute for Fundamental Biomedical Research
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