NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209240_1090526

Scaffold Ga0209240_1090526


Overview

Basic Information
Taxon OID3300026304 Open in IMG/M
Scaffold IDGa0209240_1090526 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1112
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002124Metagenome / Metatranscriptome591Y
F003512Metagenome / Metatranscriptome482Y

Sequences

Protein IDFamilyRBSSequence
Ga0209240_10905261F002124GGAMADQNEAKTKTIGFLPIEKAQSLRGWDAYIDKSTELSVLRTEAQKAKSAVRYALKERLNENGDIDFVGEGDRIRVLRVFRKQQGRRTRSLDLSSSFRERPLEGKAETHSHDEGVCEETEASRPNLNPITEEAAATLDPVTERLMAIMREKGQA
Ga0209240_10905262F003512GGALAEPRFRPMRAQAVESLPQFFEPLWQLTPSKLCLDTLWLMPNQSAAAHHLATPFPGPQPWEAPDPLPVMRRELKLLLIEMNVLRVEVEQLRAMKREARDREEFLSASVNRLMESRDHWRREAERLCALIAQVPPWSLFWWSCVDAFKAWRKPTDRGLHCA
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