Scaffold Ga0209468

Basic Information
Taxon OID	3300026306 Open in IMG/M
Scaffold ID	Ga0209468_1000858 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026306 Open in IMG/M

Scaffold ID

Ga0209468_1000858 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14007
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (47.06%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

14007

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (47.06%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003985	Metagenome	458	Y
F052516	Metagenome / Metatranscriptome	142	N
F058890	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209468_100085812	F052516	AGGA	MVLTKRGTVVLAFLFLGVAIIGFTLEVSVLVALAGENSASCSGPCQVGCYKYTPSTGQQRVDCIDPYRPFVILPPLLTATTAVAIAANRTANRRLAFRFPGIVLATVGILFLTLGITGLQSDAIPCALNGCPSIFSSYYAPYWDEFYAGLAMTASGIGLLLVSRTSR
Ga0209468_10008582	F003985	N/A	MKTRTDTTPINTSAPDIFHLGGYGRIFLLALSLINLILGIVFYISPGAVIPYWPWPVKELATRFLGAIFLAISLGCWSAIQAKLWQRAKILVLVGGSFFGLTGIVSIVRGATVSGNPAIWIWTGYFLAASAGCLILLVNYKWHRKQPEVIGRTIAARPARVFFGVQTSVVGIFGVMMVLLPGLAQEQFWPWKVLPPTLQTFGALFLATCLATGWAFLQKDPARIIVLLPLDAIFPSLALVAVGIGWNTIVTESPSSLVTSVWLLLYSFVAVGSTLLYFTLRRGASVR
Ga0209468_10008588	F058890	GGAGG	LLDSGSEDYERQILEVASSLGRDLGIELHPKRVVWYGRSVAAPNFMKGLGSDQCDFDGGDVKLPKALKDKLTSLEWRPILASQMIYERRSKLSILARWLISVPLLIFLWVPTVAILGASYGDNGMALAVFLLIPITILATWFFSHELRSVRLKADEKAASIVGPREFLNVLEKVDSYHIKDVEMRKRGGFRITISSHFPAIDARMRRIRRLTGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209468_1000858

Overview

Ecosystem & Geography

Associated Families

Sequences