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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026307 Open in IMG/M |
| Scaffold ID | Ga0209469_1000015 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 95012 |
| Total Scaffold Genes | 109 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 85 (77.98%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002133 | Metagenome / Metatranscriptome | 590 | Y |
| F002500 | Metagenome / Metatranscriptome | 553 | Y |
| F005235 | Metagenome / Metatranscriptome | 407 | Y |
| F063509 | Metagenome / Metatranscriptome | 129 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209469_100001530 | F002500 | GAG | LPITADDITLSFIAALMGLAVTLPVTYLIVDRVVANNEKKKLGPVERLAKERLRSKLGVGFLTTFLITLVIDVTSAVREQAPIPREVLLLHIEKLKTAQSDLEVLLGIYNNVLDIEIELLTSDVILQIEHLQEDFEYLAEIPQRPPTESHASHIEQLLLRTVHLTKEELIALGTDNQQIRALEDWLTVYTKERRPVQKREQPIEVRGGHTIS |
| Ga0209469_100001543 | F002133 | GAGG | MAILVRVPPQVLDDLVSKAILKQGRIYRGELAKMIGASKESLDGKTSFYLISLMKLCGLAEADMAKVLKRSRIVNQRGAVSRDISAGEELKGVIDSALEGFQTLISESFKPTGRETPPLPDKQSSKKELDEDE |
| Ga0209469_100001553 | F063509 | GGAG | MEKVGNHVCPRCGQVAMNVYYSDETDNRVGAWCEYCNMKAYYHGEELVKINS |
| Ga0209469_100001580 | F005235 | N/A | MSTIFGALFFVILILMGFNVMLWGFVQLDAYNSVITKMGQRDQQAVSENIVPTNSTCNLSCQSGSGTLFVWVNNLGGSAVSIASVYLFNVNSTGICRPTPCISTPVSGTGNIPVGSVNFPIKVQGIAIGSNSYHIVLASTRGRLFSLYYPWRFNSLTINNNGGGGQFVTNIGPLAIFFDTKSFNYTQGTQTVSQSAFCMPASTPVILYLRVANTDTNNTVTLLTQTGLQAQAYGVNGFGQFSHAWIEADNTINPSTNFPYVYPSATDYVLQPAGPNGPNPSSFAIVKIGATGPGSTGAVSFGNSNTSWITFIGLYYLYKGQAQGQTIPFMDFVTNAPNCIQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |