NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209469_1004088

Scaffold Ga0209469_1004088


Overview

Basic Information
Taxon OID3300026307 Open in IMG/M
Scaffold IDGa0209469_1004088 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6379
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012766Metagenome / Metatranscriptome277N
F027130Metagenome / Metatranscriptome195N
F097014Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209469_10040881F097014N/AMHCDVMSRSCVRDITLMLGLRRRKTNDGGSDQNGDVARLFFDSFSKRVGIVEDGLKNMSTEVNKLKISMDRSQLSDLVLLERLQKAEVLVRESLNWTKEVAGIWRELREMPVTKEERSVVTSESSAGPPRVDAEEAGLSRRV
Ga0209469_10040884F012766GGAGGMEVLREEEVLQLEEDLLRRLEEKLAPLVERAAVDAAKITMHQLRLDLMNHISRHEDTIRRLKRTESALNHIPTTR
Ga0209469_10040885F027130GGAGGVDVHRNCSLETREENRMLGKENSKENKLNEYFRRRCSNYERFLCDRVWECALCAQQVGKVETLELATVTKVEGLRRR
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