NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209469_1011497

Scaffold Ga0209469_1011497


Overview

Basic Information
Taxon OID3300026307 Open in IMG/M
Scaffold IDGa0209469_1011497 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3313
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005385Metagenome / Metatranscriptome402Y
F006213Metagenome / Metatranscriptome378N

Sequences

Protein IDFamilyRBSSequence
Ga0209469_10114971F006213GGAMPHTVKVERHQNELVVHVALLHGPDAKLPGGVLLHTEGWVDIGYGLKMFLVIGSGNISYHPKQFEEKRGLLQRLFARNPQQPLLEAKGSTS
Ga0209469_10114973F005385GAGMESRKKRRKRSKRLTSSRYKIRVRYKYHYYRWINTKDYGSFKDIYEKYKDKGYTYWCADLPPEFSNQDGTWTGYRLDGDKTHTASTLKRYGRHKSWIDPQYKFEGKPVILVYNASQ
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Institute for Fundamental Biomedical Research
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