NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209469_1040701

Scaffold Ga0209469_1040701


Overview

Basic Information
Taxon OID3300026307 Open in IMG/M
Scaffold IDGa0209469_1040701 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1506
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043326Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0209469_10407011F043326GGAVIAVSGAGMLAAAATLVLIWMADTPLPTRINESMVLGSALLLLGVAFLVAWRAGDHPPNVSMALALAFINGNAAFILLLEKLRVDATIGEPVAVLTFILGAGFYIRASQLFPRTLTPTDIALSPTIWARIKPLRLALIFFLRAPAVWVFVTGAMLLTVFVRNPHFAEAIRLIIVLMGLVYFYVMYRSGDVETRRKVLWFFEAALATLVIGLVAEGVNVVLHGTGSPTLRVVLSVSINSATCLAQVICISAAVFYAGAISPALVIRKTFIYGTTAALLLFTYATVEAFLVNIFVDVAGISDRFASALLGTLFGLTFHPIKNRMEHALRRFGSLARRRIV
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