NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209055_1000519

Scaffold Ga0209055_1000519


Overview

Basic Information
Taxon OID3300026309 Open in IMG/M
Scaffold IDGa0209055_1000519 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27039
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (37.93%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001912Metagenome / Metatranscriptome618Y
F007745Metagenome345Y
F008234Metagenome336Y
F018154Metagenome236N
F029070Metagenome / Metatranscriptome189N

Sequences

Protein IDFamilyRBSSequence
Ga0209055_100051911F029070N/AVRAKVSNKMKFMQMLDSQTYRVLQKEAKIRGASIQELLRTVIIPDWLSEHRRKERS
Ga0209055_100051912F018154N/AVEAEIAKLRKFQEFLRTEDKLVFQDLLNQCKLYAPYASTMASTIKEVPLFISMLFGQHKRIIELEKKILMLETLATKTETTVSERTVQGPVEKVEASIVQTNRSSC
Ga0209055_100051913F007745AGGAGGMSRLDRLEARDPFLADYKQDLQDVIKGMKKVGSSGLQLLVQEMIRSRWIKDRRATYTYEAAWVFDQKEEAISRILKKLEEEGNIEPAGLGRSKKGPVKPYKPRTLRLPKQTIKKPSKPSKRDV
Ga0209055_100051917F008234N/AMTELYLSFLLMYHGALTMLLGLYGILPPYFGTSPLLANIVGLDLNSYPNPLVIAGFRLPFYLGFVSIGLITTSLIVNNIVGNREKRDRRGVAAIFTTDSE
Ga0209055_100051927F001912AGGMSLLRWGKGGDSDHATGLNWDTRLVGYRKIPPWQWAKLPRYGREGAVEVRPFPACKRLRASEAQGLSGEAMKGNPTTTVILRVDKSKSSPSNNRRLDGTKT
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