NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209055_1000644

Scaffold Ga0209055_1000644


Overview

Basic Information
Taxon OID3300026309 Open in IMG/M
Scaffold IDGa0209055_1000644 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24322
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (75.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002993Metagenome / Metatranscriptome514N
F006078Metagenome382Y
F014244Metagenome / Metatranscriptome264N
F099075Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209055_100064413F099075GAGMGTVRQTPSSSQNVNPTDHPIPQGLSDRRVDGPLAVISSAPVRMPELVRTEVGLLLLISIEIVSAIIQLSGFARQNPFMPVFGYETAASVAVLSTIIFFAGGAMIVTGRKPFGSKHSEQSVIGLAVWSAMALFDFFLLPYWIPTLSVVLPGYVVFGLTGIVETAISVTAIALLTYHLQSRTGKMLLWLACGIGLGIAIAFDSQNLRLFPYYSNEIQKTIFSLNGLSPALFATAYLVLWSRIRKESAVSSPINRP
Ga0209055_100064421F006078N/AVTPLEPKVKVASQSVFYALHARDGTCASGCGVSQTGVAEIVFGVEIVEWDLCSACLSRTGFLEYFNSLPSATPREAEETKILLGISNETFERQNRTAPRIN
Ga0209055_100064422F014244N/AMVAFGEQTYTLLSNEARARGITIQELLRAVVIPDWFKAKYEPVPRQSPIIERRTREEEPVVPYSFSNKLRY
Ga0209055_100064426F002993GGAMAYGLAEGFRKTAVRLGGKKKSQAVVIATFGNHFTLNDALEKFRKEGLTFETEKGHIVKIFLDKNTKERAEQVRTIIRENFGYVEPL
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