NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209055_1002781

Scaffold Ga0209055_1002781


Overview

Basic Information
Taxon OID3300026309 Open in IMG/M
Scaffold IDGa0209055_1002781 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10876
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002514Metagenome / Metatranscriptome552Y
F020515Metagenome223Y
F064543Metagenome128N

Sequences

Protein IDFamilyRBSSequence
Ga0209055_100278111F064543N/AMPSFFQFTPKKILRIILLAIFPWLPPYLFEKTDFYFHLTHQLDWYYQLSGERLLVDLGCFALGGVIAAYLLRPRLAILQISLNALIVWVLFYVACPTYAPGGVWQPECYNSGPDGLVGFRLAGIMLSYGALPILVKAAEGRAFNRMVGPAIAFFGGIVLTVVMVWYPLAAWFSGVTYLQPLVAFQTVLLIGVPQIATGILAGRIGQSLKIGTASGLVSLVFFSLFFWTSDCPGCDRSLLYFLAPSWAFFALLGSITELGLPARIRVPHIQGWLGTIRMEDFQRVGLALVLAVCLWTLVARDYWNPSVLYSSSISPNPGDLTLGQPFYPYIGGYYNSIQYRICCVEIGVKISMANPRLLAPDNFLVAGMGVQSPNCCIDGWDFGCRADVFLLPNSSVIV
Ga0209055_10027814F020515AGGMTVATVQKDVRPCEGLCPKHGVQCKLKMFEQDAFPMHAHMIDQKMCTWKK
Ga0209055_10027815F002514GAGMNLLDQLELYTLDDARKEASQRDYWLFVYKSMKSGLLMTKNMEKHLRYKLEGLGVQV
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