NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209055_1005527

Scaffold Ga0209055_1005527


Overview

Basic Information
Taxon OID3300026309 Open in IMG/M
Scaffold IDGa0209055_1005527 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7274
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001944Metagenome / Metatranscriptome613Y
F007023Metagenome359Y
F086941Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209055_100552710F086941GAGGVRRKRSLLVVVLGLAAGLAVVLRRGTPTAGTPEPRPARPAVEAPKPALQADAEGSYVPGYEFTVNRFRFTGFSLRPDAVVTFAQTGTGAEQPMACLDVLIRPDTVHLRCDDPQVGTVTIDGRFRTRVATNRLDTAVLAAVVTVRSGSGEILYQARDSFKWHPRDSGEPGT
Ga0209055_100552713F001944GAGGVDPVVFLLALLIFVGIPALTVIKVARLRAGRPQSLSADAIARLDALERGVQDLQKELAETHERLDFTERLLTKAREER
Ga0209055_10055274F007023GGAGGMPSIAFGAALLLLFAIAAAVAVRHMDNLLSFIVIAPGYLVQAWLFETHRALGGLGYQVTMVGVSALVWTLLILGLAVIGRLLRRLVL
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