NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209055_1008184

Scaffold Ga0209055_1008184


Overview

Basic Information
Taxon OID3300026309 Open in IMG/M
Scaffold IDGa0209055_1008184 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5740
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (37.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004381Metagenome / Metatranscriptome440Y

Sequences

Protein IDFamilyRBSSequence
Ga0209055_100818412F004381GGAVPATDTCLLPVEVKVHDSVELPDPVTLVGDSVQDAVVLVARLTTPAKPLSADIVTVEVPAAFTFTLTLAGLAAIVKS
Ga0209055_100818416F004381GAGVPVTDTCLVLADVKVHDRVALPDPVTLVGETVQDAVVLVARLTTPVKPFRAVTVIVDVPAALTFCVTLVGDAVIVKSPAAV
Ga0209055_10081846F004381AGGVTDTCLAPVLVKVQDRVELPEPVTLVGETVHEAVVLVARLTTPANPLRAPMVIVEVPAALTLTLTLVGLAAIVKSWTM
Ga0209055_10081847F004381N/AVTPTWTVPAAAKVHDRVELPDPVTLVGDTLHEVLLVARVTTPANPLTAVIVMVEVPAEPALTVTLVGDAVIVKSWTLNVTVTE
Ga0209055_10081848F004381GGAVQDRLDVPDPVTLVGLTVHDVLLVARLTTPAKPLTAVIVIVEVPAEPARTVTLVGLAAMVKSWTTNVTVSETEKHSFRLRRHAWFQPS
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