NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209055_1012696

Scaffold Ga0209055_1012696


Overview

Basic Information
Taxon OID3300026309 Open in IMG/M
Scaffold IDGa0209055_1012696 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4330
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011479Metagenome / Metatranscriptome290Y
F017116Metagenome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0209055_10126964F017116AGGTGGMALDDVIAIFETFNLVMILVAFAIFARLAFKGKSLGNFRFQLSIFLLIWVLSEIPHIAVSLGLVATAGYEDFGLYLHALSMGVFALFVGWRSIKFATLHPAPPTGAFSISKERSKGIKE
Ga0209055_10126965F011479GAGMSFEELVSDSVTETMSKILGSDTWKTINFFFDMKGIAREPETFATLLDKLFGYTSNVLQKKIGETLLGKVGAPQQPSTGLDFRQILRLAKAKFPPSRLQTS
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Institute for Fundamental Biomedical Research
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