NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209055_1042134

Scaffold Ga0209055_1042134


Overview

Basic Information
Taxon OID3300026309 Open in IMG/M
Scaffold IDGa0209055_1042134 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2012
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016649Metagenome / Metatranscriptome245Y
F017625Metagenome / Metatranscriptome239Y
F075920Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209055_10421341F017625GAGMRNNEKRKEINEQEFFGFAKSYLSEAFPNPQRIDCPPDSELTRLAELPREANPSVSQHLTCCSPCFNRYMEILADLKRRKTG
Ga0209055_10421342F075920N/AMSEASGLFPVVPTMAAEGSRSVFRLNTVDRRGRKIEPAALEAAEGIYSRALEHGLRLLGDPAVVTTALEEVAATVSRAIKTKDPPRGPGQVRDLRAYMFRAFLRHVNHLKRKELTLVSLSEVGHMSEPAWADALRELENKMLLDECLAQCDFIDQDMAWRRMQGLSWEEVGKIHGLSAHAAEARFSRALQQARERLKI
Ga0209055_10421343F016649GGAGGMRNEPSNLSLVLCFAIIATIGCERLSRPNISGVWKGTIQASDKSGHKWQGPAELTLNQNGDAITGSLAFTHPQGGRVQIPISSGVVSKDAVTFAGQNQFPMGGSIEVTFHGTVSGASLAGTTDMTSRGLFGPVTNTGPLSLTKQ
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Institute for Fundamental Biomedical Research
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