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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026310 Open in IMG/M |
| Scaffold ID | Ga0209239_1000011 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 117657 |
| Total Scaffold Genes | 128 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 88 (68.75%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Angelo Coastal Reserve, California, USA | |||||||
| Coordinates | Lat. (o) | 39.73825 | Long. (o) | -123.6301 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003037 | Metagenome / Metatranscriptome | 511 | Y |
| F007642 | Metagenome | 347 | Y |
| F008127 | Metagenome | 338 | N |
| F046962 | Metagenome / Metatranscriptome | 150 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209239_10000116 | F007642 | AGG | MPSLTSREAVAVQEKPLAEVLVEGELSPFEDEALYRILRRTFRVEHPSYAELSDEDLATRVNVTFHYPYVTAIFTNVLRENWRELKELLRQVRYRRGRAGAAVTFTFVGEKNRLVFRSGVLEEKELSSALDQIGHLTGILGQMLRPETMEKPLELVEAKYDMRSDRWHEFKGFGSSDPTESYVFDESSFRWVRS |
| Ga0209239_10000117 | F008127 | AGTAG | MSDEFLPRAHSKRLGELERSNWRSLRDGRNFDRIDPAIREIVSLLNKKGYRTFSSCSGGHPTNPRWKINRHESGYLAFSPPSNVAFTLYLGVRKKNKDFTVEAQAVIDDGDGGDRETMCTRFYWQLSDRKKHKLEHYGRLFAQMKGIVEDLPREPGNGNDVLAGLLGKENLRTGLRIVRRQMRRFTSN |
| Ga0209239_100001180 | F003037 | GAG | LWVEFKCPLCGKDLDDDKTMANFLVCADSSHGPLRFFTGDGCYFTTNEQVAEDLMKKGKRVHIVDPKEFFGNQTINLE |
| Ga0209239_100001193 | F046962 | GGA | MEETANSGYPPETTTRIVLQDTMTGDQLKNLLAELISSSASLNVRVWLDGVYTDIENAGPHREWMKGREVYFKVEGKVDGQNCLEEAAPRSI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |