NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209239_1000746

Scaffold Ga0209239_1000746


Overview

Basic Information
Taxon OID3300026310 Open in IMG/M
Scaffold IDGa0209239_1000746 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19091
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (55.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006617Metagenome / Metatranscriptome368N
F010240Metagenome / Metatranscriptome306Y
F030029Metagenome / Metatranscriptome186N

Sequences

Protein IDFamilyRBSSequence
Ga0209239_100074610F006617N/AMRGEDRDEGANMVGAKPMLLWYVWIRLVDGAWHRLDEISKQLRLPNNAIEWAAKFLCDKGMAERGFEENEIRLHRGNAKFEDAVRALSSSTKSSK
Ga0209239_100074616F030029GGAGMQTLVPLLKQTLQTYAEKPSEFHRELQFYFGFGALTLERMIVKDLFQKLNLHYTSSNELDFETSMRLARKDLSLLQRGVLRK
Ga0209239_10007468F010240N/AMPLLTILEQFQVRSLPLRRLLAINFREHVTIYVLASLSNAFLTASQYLAVSAAVVSYLPVDPGTLALITRYGPSSGIVLALVLNSLIFQGVLAVLLVASALSAIVKSSWRWAYACLGVIVSGFVGYWLAAKFLVILEWISTLQNSQVNSSNEYTSLFWFGLAASTSYVLMILVLRKSYEKLARHTRRVEDLKTKNSSCLPGRSPENPWS
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