Scaffold Ga0209239_1013839

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209239_1013839

Scaffold Ga0209239_1013839

Overview

Basic Information
Taxon OID	3300026310 Open in IMG/M
Scaffold ID	Ga0209239_1013839 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4191
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F086353	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209239_10138392	F086353	AGG	MTGSPEGPIANRSVTWEQVAQLGMPEQIGCPDIRPLGPTVAQLLKAPKVKQATLARFLAIVKSYYEAFGRLPDEYQGASNVSIPIEVIALIGEKLVGRAQWSKEHNDKQAEAARKRDAEWQAKADAEWLKHPKLPPTAVAKRIAPDNWNYVRQRINKPAK

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