NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209239_1018841

Scaffold Ga0209239_1018841


Overview

Basic Information
Taxon OID3300026310 Open in IMG/M
Scaffold IDGa0209239_1018841 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3461
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019697Metagenome228Y
F024260Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0209239_10188412F019697N/AMRRELKLLLMNVLRVEVQQLRAMEREARKTEEFLSASVKRVMASRDHWRREAERLHALIAQVPPWSLFWWHCVEAFKAWRKPAERALHCAPSET
Ga0209239_10188414F024260AGGGGGVLGQQSESADNRSNTAGQNGAIVNQAVRPSSAGERDGVETPATKPTSGAKKHWLDYATAFLTLAAAGGAITAAVFTGWQAVTADQGLRDSNRAYVHSTNFRFVHYGAKNESGRTQWSVSPLIENTGSTGTRGMLMNTTISSAGEPDFASLEKAAFSPALILPKSDMTGAVFSMDGRGLDLLRGGGLIAMGIITYADIFGDLHLVEFCHRAQFGPIDWEGVPAGQPLRIRGIA
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