NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209723_1002470

Scaffold Ga0209723_1002470


Overview

Basic Information
Taxon OID3300026311 Open in IMG/M
Scaffold IDGa0209723_1002470 Open in IMG/M
Source Dataset NameAnaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2 time_0 SIP DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24695
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (46.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location NameWashington, USA
CoordinatesLat. (o)47.6525Long. (o)-122.3049Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030944Metagenome / Metatranscriptome184Y
F090058Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209723_100247015F090058GAGMKLHYYIKGKDIPIYKGKLYIVASNDYEKVCTLIPNFEEISKGELYGHTLLVSYKGVESIFIVLNFDHEYEKMTYGVIVHELRHAADILAKQRDLNTGFENTENNAYIMEWMANTVFTELIRWGFVPNKKK
Ga0209723_100247027F030944N/AMKNMNTTLEIPEGSKAVISGKVINGKNYLVVEVGQEPELKEGDLAIFWNDNTEDAIISVCKRLDDNGRYVDHLGLCWDNALKWDGTKGQYEKVLRGEI
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