NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209153_1000050

Scaffold Ga0209153_1000050


Overview

Basic Information
Taxon OID3300026312 Open in IMG/M
Scaffold IDGa0209153_1000050 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56313
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000871Metagenome / Metatranscriptome851Y
F045021Metagenome / Metatranscriptome153N
F075931Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0209153_100005010F045021N/AMTAAWPYTSPSRAAEQLLGAPREVRIPRNGDLDLWFKGWCLGHAEGRKGAATTTSGVDVEIYLTVGKRLVAHVCQWSLREGAGLAEDHRVAALESPSQAISWLKQDNAGRLGYLAKRAWVQACATWPGLQSEAVERVE
Ga0209153_100005014F075931AGGCGGMMQRLPELKPTPIRPRHPLVYGAGLFLFIAVMAFIGRIGMFWVLLTAILAVAMGIGAIAIAVRGR
Ga0209153_100005031F000871AGAAGGMRWLCFLLLASPGAAAAQGTASQSLRFDLAAVPATRDSFVFHFRGQERGWAVWQFEIRPLETTQQLVYTARSEFRPVEEERLRVVLDRLTGLPISTFHHIDLFSPTSDTVMVEHDLEVKHGEISGRRRVGTKSGEVKIIPVTQPFAPGTVLADYVFIAGAVTNVAPGDSLGVPAYKEFADSLTTLSFVAESPTTIRVPAGRFDVQPLKSGNFRIFATRTAPRRVVKGETLDGVFAFELVHSGPVVPTPE

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