Basic Information | |
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Taxon OID | 3300026312 Open in IMG/M |
Scaffold ID | Ga0209153_1000118 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 40597 |
Total Scaffold Genes | 31 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (77.42%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California: Angelo Coastal Reserve | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000217 | Metagenome / Metatranscriptome | 1557 | Y |
F001311 | Metagenome / Metatranscriptome | 726 | Y |
F044998 | Metagenome | 153 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209153_100011823 | F001311 | GAG | MMNKKPETQTAPKSPTTQTERRGNRRCHITQLMRIRPSDPKKPQFEDLRGSMSVSRSGVYFQTSEPGYEVGLRLFVTMPYSNDPASLNREYLAEVVRRDVLPTGMFGIGIKILMEMGVQHSYNFGASTPF |
Ga0209153_10001184 | F044998 | N/A | MASAILSVLVLALLVGVILLLKWRFTFSDERRRPLAQAVAPQGPADRTFTYGFQVLGPAGLSLFGGRALANNSAATVRVTREQRAEAFLQRILALTGAKKAEGAYVLNVGDVQFQIRDRFIRRLQNPGDPKSPYEETCFYLVHNGMPKVEEIATALLHLSNNPGLFDKWALQNGVAFKADGKVFDRCPLMGLR |
Ga0209153_10001185 | F000217 | AGGAG | MTAKILTFSCQGDTTILEYDPATADMDEVNRVVAEYEAKTGAQPFDVATGERIEKITREQNEVLMVHPIAGG |
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