NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209153_1000118

Scaffold Ga0209153_1000118


Overview

Basic Information
Taxon OID3300026312 Open in IMG/M
Scaffold IDGa0209153_1000118 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40597
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (77.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000217Metagenome / Metatranscriptome1557Y
F001311Metagenome / Metatranscriptome726Y
F044998Metagenome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0209153_100011823F001311GAGMMNKKPETQTAPKSPTTQTERRGNRRCHITQLMRIRPSDPKKPQFEDLRGSMSVSRSGVYFQTSEPGYEVGLRLFVTMPYSNDPASLNREYLAEVVRRDVLPTGMFGIGIKILMEMGVQHSYNFGASTPF
Ga0209153_10001184F044998N/AMASAILSVLVLALLVGVILLLKWRFTFSDERRRPLAQAVAPQGPADRTFTYGFQVLGPAGLSLFGGRALANNSAATVRVTREQRAEAFLQRILALTGAKKAEGAYVLNVGDVQFQIRDRFIRRLQNPGDPKSPYEETCFYLVHNGMPKVEEIATALLHLSNNPGLFDKWALQNGVAFKADGKVFDRCPLMGLR
Ga0209153_10001185F000217AGGAGMTAKILTFSCQGDTTILEYDPATADMDEVNRVVAEYEAKTGAQPFDVATGERIEKITREQNEVLMVHPIAGG

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