NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209153_1012759

Scaffold Ga0209153_1012759


Overview

Basic Information
Taxon OID3300026312 Open in IMG/M
Scaffold IDGa0209153_1012759 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2672
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003486Metagenome / Metatranscriptome484Y
F087013Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209153_10127592F003486GGAMSEKSLEKLRALLKTYAERTGAGAAPGAGAEAAGGVKPTHDESERRRRACGDRLQKVVRAVLDRVVDELKNAGHEAVIEDQSATAGAYPSLELAFTPRSPEGAALASVLTFRCDPRRGIAVARDIKPSPAKGRVVTTSSDRIGTMKVEAVSVEWVETKTLSFVEAVLKVN
Ga0209153_10127593F087013GAGLLLVNTETVSRGLGSMHSSNHRHVTGVALSARAGVAGSVLLLLLSACAISHRTALDRVPLTPASDHVLAGRLATADVVVAGVLTRAQRDIRYEAPCGIIAHIMRRCDETQAYDARIRAFDGHEWSLMFFRLGPGPHPALGDSAVWVLHRDAIYPYLVCAQRAALTSTGCVSEPSFILESDDDVLPLSEWPRVQRLLQALNL
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