NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209153_1032526

Scaffold Ga0209153_1032526


Overview

Basic Information
Taxon OID3300026312 Open in IMG/M
Scaffold IDGa0209153_1032526 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1789
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096991Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209153_10325262F096991N/ATFVGRKGYEDGADATEYEIYLYDADGTPVSQTGAAKQLVVPAMQTTVLNLAEIIGEKKSFWGGMRIRLRPKGRQAMHASDLFSSAFVRWKTDSSFDNVHANPDPWEWKRPDSFFYSMPFPALDQYECVFSLFNPNPEKSAGTITLHNELGEKLKELPYELKPHASLLLNLRRAEFVNDFAAAFTSSRNDHASKSLLLTPNGGTLAIVNQPGSTKSFGYLLIKRSGSSRFSVEHPIHQPPFKPLAAPAPFDVEGRFKPKNILYTPLVFHSKQLGGVTLESRFHFSSGAPIEEFLWMKPFITDPGGNIAWQVTGETGFPATVCPKQVQRETIKLGGMQSCVFAVADLALPKTFSGGMSLAVTPTTNHTLMKVELRVKEWGAHAFTHFRPGLQSARGYQASPPRGGLATDYIACGARLERNGAKNIRDEIIGVINIDDKALTGNPALEVFANGGLVTRIELGEVPAFAARHYLLSELSSGRIGPHDLTLRLVDERATLLMSVVHLDYVRRDLSLDHGSDRFSTFNDYGCAASA
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