NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209761_1000006

Scaffold Ga0209761_1000006


Overview

Basic Information
Taxon OID3300026313 Open in IMG/M
Scaffold IDGa0209761_1000006 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)109918
Total Scaffold Genes117 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)88 (75.21%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041660Metagenome159Y
F061718Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0209761_1000006104F041660AGGMMVSHDTKRILGISSLVLVLLLLLARSLPFPFPGSQQSAIPRNPRGPSGDAPTLIFSDNASFTKAPTFTLTLTQSHSYMWSFNVTTGSVKVDLTDPQTSSIFWTVGPRSVGQWHLNGTSFASFNWTAPASTDYSMVLENQNLWSWSTSLSSSTSPLSTCDIHVWDLNIPGPPRIIVQ
Ga0209761_100000659F061718AGGAGVSTVKWAKSRAGKNRRSRKAISTIMANLTMLIIVVSLSGLLFVWATSSFGAYTGGAGYWFTSRSIANQERVSVEAVYFGSTGSVNNLVTLYVRNVGTTPFSIASVYVNATLYNWSGGSVPVNQVQQIPLNLSTGGQSWAKGDLQNIRVATIRGTIVTTTWVS
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