NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209761_1000286

Scaffold Ga0209761_1000286


Overview

Basic Information
Taxon OID3300026313 Open in IMG/M
Scaffold IDGa0209761_1000286 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29190
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (55.17%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034130Metagenome175Y
F037152Metagenome / Metatranscriptome168N

Sequences

Protein IDFamilyRBSSequence
Ga0209761_100028627F037152N/AMSSFDNAVESYEKQLRDWLSKCPLCVLSPQVMLHARRGTAMVQVGQSFEFDERLHARDNPPNHLLARQLVQYNGRIKNPIIFWLNSSFPSDPIYQLHKQPVIHHVLRLGPGYTFTNVLGGLRTALKAEKINGDSIDWDPKKLK
Ga0209761_10002864F034130GAGGMRVPSVGPFELTEIEFVGLELMRQEDERQLRKTTLRATWSGRELSVKAEHPPTLIGSGEDEVASRALPY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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