Scaffold Ga0209761_1004980

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209761_1004980

Scaffold Ga0209761_1004980

Overview

Basic Information
Taxon OID	3300026313 Open in IMG/M
Scaffold ID	Ga0209761_1004980 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8790
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036626	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209761_10049804	F036626	AGGAGG	VDQERLLKRVWLVNGLLLAVLFGALGIWLVVELSSSWFHRHSAVITATGGAPAERASRAVRYDPPQSIWKSTTRIVLIGYGEAFERPAHEFASSNSYGERYALYVNAIFLEPGGGPGHLLLDRPALIRSVNFPRSKDDSLQAWITYEIAFEDTDGDGGLDENDAASLYVSDLHGGSFRRVLPEGWSILAHEPLDGRRIVVLALRSAERGDRRSLEETPERAFFYDVQTGRAEPYAALDSLTARAARIVGR

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