NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209761_1005257

Scaffold Ga0209761_1005257


Overview

Basic Information
Taxon OID3300026313 Open in IMG/M
Scaffold IDGa0209761_1005257 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8557
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015579Metagenome / Metatranscriptome253Y
F017113Metagenome / Metatranscriptome242Y
F097102Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209761_100525710F097102GAGGLEVEVYNCGCKVRIYEVEFGESKNDLTEQPSVISDYTPCSKHRNARRIPPEEARLLKVRGEHEAFLNE
Ga0209761_100525711F015579GGALGSDSKKPPRPRHRFSFSGPSEQPKGSSIPRTANVTRDDILNSLTKHAHPQEPEETVPKTEEAAQFQGPNETAVEVRARNRGSARGALVIFLGGFVAVWLYGYVTGAYEIPYLRGVTQNPAVQVGVQLASSNPILFGAVSVSVLLGAIYLLHRKKN
Ga0209761_100525712F017113AGGMSLSHWDEGSDSDHVVGLNLDNRLAGHRKILAWQWAKLPRYGREG
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