NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209268_1000454

Scaffold Ga0209268_1000454


Overview

Basic Information
Taxon OID3300026314 Open in IMG/M
Scaffold IDGa0209268_1000454 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21977
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (68.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001047Metagenome / Metatranscriptome793Y
F005447Metagenome / Metatranscriptome400Y
F082433Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0209268_100045414F001047GAGLDDVIERVTLREKLIQTAKQFAEKKREDRYTLAIKQFENLMGDFLRLYQPILDRLGSYRQGLQKELTGLKSSLATVTGMLEVSKGIEGLQAKVQRLEADGQDLDETIKEKGKTADKIDDLFNRIRTHNPGVAGSTGRDAFSDVLSGMPKDLFSETPETSKEVTRKAPTRG
Ga0209268_100045432F082433N/ANQLKSFPGLIEAWTVPGQFDVLALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFFKA
Ga0209268_10004547F005447GGCGGLSAHPCGIAILSPGSGATLNKNTDVNPSFIVSFLVHNITLVNPGTTGDVNTTIGSGTSGHNEGHIHVFVDNVYTTIWANLNGIPLTLTPGSHTIRLDLVNDLHQEFNPGINASTTVNVVDPLQSNASNAMYFSLGALIVSIIAVILVAYVAFKRKPKA
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