NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209268_1009241

Scaffold Ga0209268_1009241


Overview

Basic Information
Taxon OID3300026314 Open in IMG/M
Scaffold IDGa0209268_1009241 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4064
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004353Metagenome / Metatranscriptome442Y
F010390Metagenome / Metatranscriptome304Y
F066676Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209268_10092412F010390AGGAGMRRSVIAALCFIGCCAVPVHGQTPTVAPLRVAAGTVVKFHLQTRLNPTSGDSLDALPKGTILQVRVLDSIDSATDRDGTEFHGTLAAPLVSGGQVIVRNEAEVRGLLVLLRSRSHPEGFRYELLVTSLTDRGKSYDLTASLNPTFLDTGIQPESASKAASK
Ga0209268_10092413F004353AGGAGGMRNVGRVIFSTLACAALAAAVWSFMPATTHATAMLGVPSSQEATQQQSVSGKIASVEKNSFTLTVGQSQTSSEKQNLSQDPATPKTMKFQIDKNTAIEGSLKVGASADVTYRQEKGANIAISVHVTP
Ga0209268_10092414F066676AGGAGGMNFDSITKGLGTKVADQLADMGTKKATEAMNQANLMLKLLQDAGYQVGDLDLELGVPPTISISLKTGPMMSDSKLEAVYQANKENEVLALVLGALIQANKLRDMVKLETIELKDAKIVLKATPSISLHWKEKAAGSTASA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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